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Recommend using the latest update of CCP4. To use those tasks, please install CCP4 fromĬCP-EM v1.6 has been checked for compatibility with CCP4 v7.1.018 and v8.0.010. Instructions areĬCP-EM uses programs from CCP4 for a number of tasks. To run HARUSPEX, some additional software and configuration is needed. This page for details and possible solutions. There are some known problems running CCP-EM on certain operating systems.

ccpem-python for CCP-EM Python environment.

ccpem- for direct access to tasks (e.g.

To run this task from the RELION GUI, please install CTFFIND4 or Gctf separately. Also note that no programs are included for CTFĮstimation. Setting up your shell environment to ensure you use the intended version. If you have existing copies of these programs on your computer, please take care when

source setup_ccpem.sh (or setup_ccpem.csh for csh)ĬCP-EM contains RELION v3.1 and OpenMPI.

To report bugs or give feedback please contact Tom Burnley / Colin Palmer Installation Further details are available on the licensing page.įor talks, tutorials and example data for our model building tools such as REFMAC, LocScale, Coot, Flex-EM, Buccaneer & Nautilus The CCP-EM suite is free of charge for non-profit use under theįor-profit users should please contact information on commercial licencing. Recent developments in the CCP-EM software suite (T. The suite is described in more detail in this article: The CCP-EM software suite is a package containing tools for cryo-EM, including: Previous nightly releases and stable versions can be found in the (If you find any bugs, please let us know!) Nightly builds have the latest features but also have a higher chance of bugs or errors. Latest CCP-EM nightly for Mac (updated 1 Sept 2022) Latest CCP-EM nightly for Linux (updated 1 Sept 2022) If you do run into any problems, please let us know or use Coot from the To install, download the file, remove extended file attributes with It is possible there could be problems because the rest of System and it has not been tested thoroughly in this standalone form.

This was made using the normal CCP-EM build Standalone build of Coot v0.9.8.1 – the final release of Coot 0.9 – for Mac OS X. It is also the last release that will support Red Hat / CentOS 6 or similarly old Linux versions.Īs a convenience to Mac users, we have also produced a Future CCP-EM versions will use Python 3,Ĭoot 1 and RELION 4. See below for installation instructions.ĬCP-EM 1.6 is the last release that will include Python 2.7, Coot 0.9 and RELION 3.1. See Post-installation configuration.CCP-EM downloads CCP-EM software suite Latest releases Stable You can also browse the repository and download an RPM file directly:.Install the package by running sudo yum install helix-p4d.Where is either 6 for RHEL 6 or 7 for RHEL 7

Add the Perforce repository to your APT configuration.Ĭreate a file called /etc/apt//perforce.list with the following line:.Add the Perforce packaging key to your APT keyring.For YUM (Red Hat Enterprise Linux or CentOS).Verify that it matches this fingerprint:Į581 31C0 AEA7 B082 C6DC 4C93 7123 CB76 0FF1 8869įollow the instructions that apply to you:.To obtain the fingerprint of the public key:įor Ubuntu 14.04/16.04 & RHEL/CentOS 6/7: gpg -with-fingerprint perforce.pubkeyįor Ubuntu 18.04/20.04 & RHEL/CentOS 8: gpg -n -import -import-options import-show perforce.pubkey.To ensure you have the correct public key for installing Perforce packages, verify the fingerprint of the Perforce public key against the fingerprint shown below. Package installation requires sudo or root level privileges.

To install a different package, substitute its name for Interface ( p4, which is distributed as helix-cli), the service controller ( p4dctl), and a configuration script to setĪt minimum, you need to install the helix-p4d package. Service, p4d, as well as the command line The helix-p4d package installs the main component of a Helix Server is divided into multiple packages, so you can install the components you need. This topic assumes you have met the Prerequisites.